1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATACTTGCTTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttatttatttatttcccttattccctttgatccctgacagttctcatatttggttttgagttgatcagaataggtcgcataattttttcctctggcc...
species | Physcomitrella patens |
transcript | PP1S41_177V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTTEST: gi|162230102|gb|FC406250.1|FC406250
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTTEST: gi|208350063|gb|DC910298.1|DC910298
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAA-GAGCTTTEST: gi|208354187|gb|DC902443.1|DC902443
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTTEST: gi|162249310|gb|FC423980.1|FC423980
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTTEST: gi|100389012|gb|BY952216.1|BY952216
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTTEST: gi|67569370|gb|BJ942194.1|BJ942194
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
EST: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAG GTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
genomic: TTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttattta ... catgttttagGTCGAGACGTTCTTTGCCCGACTCATCCAGCGGGTTGCACCAAAGAGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTTGCTTTACGGAGATATCATGGCTAAGGCAGCTCACTTGCTGAAGCAACCTCAGgttttatttatttatttcccttattccctttgatccctgacagttctcatatttggttttgagttgatcagaataggtcgcataattttttcctctggcc
- - - - - - GGAGAT
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA