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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaactcccatgtacacaaaatgcagatgaccatcatatcggttttcttaattcgtgtagtttctccagaaagatgatctgagtagaatagtact...

Basic information

species Physcomitrella patens
transcript PP1S41_163V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100355722|gb|BY965113.1|BY965113
EST:     ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG                         GTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGGAGGCAGA
genomic: ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaac ... tttgccacagGTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA
EST: gi|100420676|gb|BY993459.1|BY993459
EST:     ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG                         GTTTCCGTTCTGTA-CATCTCAACA
genomic: ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaac ... tttgccacagGTTTC-GTTCTGTAACATCTCAACA
EST: gi|208351989|gb|DC925798.1|DC925798
EST:     ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGGTTCCTCTCTCTGG                         GTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA
genomic: ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaac ... tttgccacagGTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA
EST: gi|162196614|gb|FC374904.1|FC374904
EST:     ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG                         GTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA
genomic: ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaac ... tttgccacagGTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA
EST: gi|37852321|gb|BJ610329.1|BJ610329
EST:     ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG                         GTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA
genomic: ATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaac ... tttgccacagGTTTCGTTCTGTAACATCTCAACAGAGTGTGTTTTTTGACGGGAAGGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGGgtatgaaaactcccatgtacacaaaatgcagatgaccatcatatcggttttcttaattcgtgtagtttctccagaaagatgatctgagtagaatagtact

- - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGATG