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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag

Basic information

species Physcomitrella patens
transcript PP1S38_376V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os09g08430.1 (Oryza sativa), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcc-tgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
||||||||||||| || |||||||||||||| ||||| || ||||||||||  ||||||||||||||||||  |  |  ||     | ||| | | |  || | || ||  | |  ||   |||||||   | ||      ||| ||| |||     ||  |                                                      
CTTACATGTCCTCCCCGTGCCACATTGAGCTTATCCTGTCAGAGAAGGAAGAACCAGTGAAGAAAGAGgtatgtgcatctgtaccttgagaagtccattgtataagctaactgctggttgatgtttttttttattaccatctgattgtgaatgtgttatgcag-----------------------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataat-tcagaactgtaaattaaccggttctttacgggctttgcag
||||||||||||| || |||||| | ||||| ||| | || |||||||||| | | |||||||||||||||  |||   |  |  ||   ||   |   || | || |  |||| ||   |   |    | |||||         |  || | |   |||  | |||| || | | |   | ||||                              
CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgta--tttgtttctttcatcccattata---gtctcagttgttttcgtgaattaggt----agtttgt---------gggaagtaatgctttggatttatatagactattcaagctgt------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaa------aagttttagatagtttcc--tgtcctgtttttcga----ttttgtttcgtgactgtaaa-----ttcacaatttacagttatttataattcagaactgtaaat---taaccggttctttacgggctttgcag
||||||||||||| |||||||||||||||||||| || || |||||||||| ||| ||||||||||||||| ||| | ||||| |   | ||| |||      |  || |   ||  || |  ||  ||  |||  ||    | |||||       |  | |         | ||||   ||| |||  | || |  | | |   |   |||    |    |      |||| ||
CTTACATGTCCTCCCCTTGCCACATTGAGCTGATTCTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGgta-tttaacatgctcataaaaatgccaactagatattttctgagtatcttgcattgatctaatttcagagctgtattgttcttctggtacagaagtatccttccattttatgttctttccatttgaatagtatctgtctgtaatatatgtcatctttattttgtag

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G148744_T01 (Zea mays), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtt-tttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
| ||||||||||| ||||||||||||||||||||| | || |||||||||| ||| ||||||||||||||| ||  | ||| | | | | ||| ||     | || ||  ||||    | | ||   | | | |  ||||    ||    |||      |||  | |  ||||  | ||                                     
CCTACATGTCCTCACCTTGCCACATTGAGCTGATCTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGgta-ttacacatgttca-tcaaatgccat---ctatatattttttctgagcatcttgcattggtctaatttcagagct----atttttggctta--ggttcttatggtaca-------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G127521_T01 (Zea mays), 5'ss of exon 5
--------------------------------CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
                                ||||||||||||| || |||||||| ||||| ||| | || |||||||||| |||||||||||||||||||  | | ||       ||   |    |  |||  |  |  || ||||   |  |    |   ||  |       |||    |     |   || |  |||    |||||                                    
AGCTTAACATTCTGTTTGCCTACCTGGTCCAGCTTACATGTCCTCCCCATGCCACATCGAGCTCATCTTGTCGGAGAAGGAAGAGCCAGTGAAGAAAGAGgta--tgtggacatgtggttgtgtac--actgttgcacctgattacctgatttagtgcatgggattaat-----gttgtgctattgtggt---caatcgtttccttttcag------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G126594_T01 (Zea mays), 5'ss of exon 5
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctg-tcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
||||||||||||| || |||||||| ||||| ||| | || ||||||||||  ||||||||||||||||||  | | ||       ||   |    |  |||  |  |  || |||| | | ||   | |  ||  | | |||           |   |   || |  |||    |||||                                    
CTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAGgta--tgtggacatgtggttgtgtac--actgttgcacttgattacctgattcagtgcatgggattaatgttgtg---------ctattgtggtcaatcgtttccttttcag------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 5
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
||||||||||||| || |||||||| || || ||| | || |||||||||| ||| |||||||||||||||  ||| | |    |    | | |||   | || |  |   |    |    |  ||   || |||||  |  | |||       |  ||    || |                                                
CTTACATGTCCTCCCCGTGCCACATCGAACTCATCTTGTCAGAGAAGGAAGAGCCCGTGAAGAAAGAGgta--tttggttttgtacactgtttgcacctgatt-atctgactgaaagcgtgggatt--aatgttgttgtgctattgtggtcattcgtttcctcgtcag-----------------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G119169_T01 (Zea mays), 5'ss of exon 7
--------------------------------CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
                                ||||||||||||| || |||||||| || || ||| | || |||||||||| ||| |||||||||||||||  ||| | |    |    | | |||   | || |  |   |    |    |  ||   || |||||  |  | |||       |  ||    || |     |                                          
TTGCAGCTTAAGATCCTACCTACCTGGTGCAGCTTACATGTCCTCCCCGTGCCACATCGAACTCATCTTGTCAGAGAAGGAAGAGCCCGTGAAGAAAGAGgta--tttggttttgtacactgtttgcacctgatt-atctgactgaaagcgtgggatt--aatgttgttgtgctattgtggtcattcgtttcctcgtcaggctga------------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
|||||||||| ||||| |||||||||||||||||  | ||||||||||||| ||| |||||||||||||||||  | ||   |   |  | |  ||  |    || ||| || |   || | | ||| |  |    ||| |  || | | |   |   ||  ||                                                   
CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattgaccatctctctgttaacagta----tatatacttcc---tcttttcttttgcatcaaattcttatctattattgttc---ttgtag---------------------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
|||||||||| ||||| |||||||||||||||||  | ||||||||||||| ||| |||||||| ||||||||  | ||   |   |  |||  ||      ||| || |  | |  || | | ||| |  |    ||| |  || |   | | |   ||  ||                                                   
CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAGgtaatgattgaccatctctctgataaca------ttatattgacttcc-tcttttcttttgcatcaaattcttatctattgttgctc---ttgtag---------------------------------------------------

upper sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaatttta-gatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatt-tacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag
||||||||||    || |||||||||||| ||||  | || ||||| |||| ||| ||||||||||||||||||| | ||| | ||      |   || |  || | ||| ||   | || | ||  ||  |  | |  | | | | |   |      ||  ||||                                                   
CTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaatgatcccaacgcctctctgaatatcttcaaatacttatatttcatcttcatcactgatctcacataatttttgttgggttcttgcacag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37823698|gb|BJ581764.1|BJ581764
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|37832499|gb|BJ590511.1|BJ590511
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162203216|gb|FC379313.1|FC379313
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|37849607|gb|BJ607615.1|BJ607615
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|7067215|gb|AW497070.1|AW497070
EST:     GCCACATTGAGCTGATCTTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162248381|gb|FC420906.1|FC420906
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|37841187|gb|BJ599195.1|BJ599195
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162202837|gb|FC379819.1|FC379819
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162237079|gb|FC413238.1|FC413238
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|37850940|gb|BJ608948.1|BJ608948
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|67693770|gb|BJ954003.1|BJ954003
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162251657|gb|FC426063.1|FC426063
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162276406|gb|FC452656.1|FC452656
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162271900|gb|FC448110.1|FC448110
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162237080|gb|FC413239.1|FC413239
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|7286822|gb|AW599309.1|AW599309
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162213580|gb|FC389452.1|FC389452
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|37848210|gb|BJ606218.1|BJ606218
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162177226|gb|FC352655.1|FC352655
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162202838|gb|FC379820.1|FC379820
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162248380|gb|FC420905.1|FC420905
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162217445|gb|FC393121.1|FC393121
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCCCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCCCAGGAAAAAGCAAGCACGTTTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162177227|gb|FC352656.1|FC352656
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|7207253|gb|AW561256.1|AW561256
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162163828|gb|FC340362.1|FC340362
EST:     GCCACATTGAGCTGATCCTTTTTGAGAAGGAAGCCCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCCCCAGAGGCTCACAGGAAAAAGCAAGCACGTTTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162272416|gb|FC449055.1|FC449055
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162196966|gb|FC373332.1|FC373332
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162203215|gb|FC379312.1|FC379312
EST:     GCCACATTGAGCTGATCCTTTTTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTTTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|37851774|gb|BJ609782.1|BJ609782
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162217446|gb|FC393122.1|FC393122
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162269116|gb|FC444984.1|FC444984
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162271899|gb|FC448109.1|FC448109
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCCCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCCCCAGAGGCTCACAGGAAAAAGCAAGCACGTTTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|67570487|gb|BJ943311.1|BJ943311
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|18355556|gb|BJ187615.1|BJ187615
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCA
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCA
EST: gi|37838498|gb|BJ596506.1|BJ596506
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162251656|gb|FC426062.1|FC426062
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCCCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCCCCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
EST: gi|162262697|gb|FC438479.1|FC438479
EST:     GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG                         GCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT
genomic: GCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttag ... ggctttgcagGCAGAAGAAGCTGCTGCACCAGAGGCTCACAGGAAAAAGCAAGCACGTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataattcagaactgtaaattaaccggttctttacgggctttgcag

- - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA