Sequence
atgc intronic sequence ATGC exonic sequenceAGATTACTGCAGAAGAACTTCGAGCCTACGATGGCACTGATCCCAATAAGCCTTTGTTGATGGCCATCAAAGCTCAGATTTATGATGTTTCTCGGTCAAGgtatgtgaggtgaaaggggtggatctattttgtcattcttatccattgttttgtgctttgttagttggacatccttctcttcaaagattcattgttgtga...
Basic information
species | Physcomitrella patens |
transcript | PP1S38_353V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S38_353V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA10G38150.1 (Glycine max), 5'ss of exon 1
AGATTACTGCAGAAGAACTTCGAGCCTACGATGGCACTGATCCCAATAAGCCTTTGTTGATGGCCATCAAAGCTCAGATTTATGATGTTTCTCGGTCAAGgtatgtgaggtgaaaggggtggatctattttgtcattcttatccattgtttt-gtgctttgttagttggacatccttc-tcttcaaagattcattgttgtga-
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AGATCACGGCGGAGGAGCTCAAGGCCTACGACGGCACCGATCCCGAGAAGCCCTTGCTCATGGCCATCAAGGCCCAGATCTATGATGTCTCCCAGAGCAGgtttactgtctcacataaa---acccaaccctttgttctaaattgcaatttttgtgtttttttctcttcattttgatggtctatgctcattttaggttgtggg
upper sequence: PP1S38_353V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA20G29660.1 (Glycine max), 5'ss of exon 1
AGATTACTGCAGAAGAACTTCGAGCCTACGATGGCACTGATCCCAATAAGCCTTTGTTGATGGCCATCAAAGCTCAGATTTATGATGTTTCTCGGTCAAGgtatgtgaggtgaaaggggtggatctattttgtcattctta--tccattgttttgtgctttgttagttggacatccttc---tcttcaaagattcattgttgtga
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AGATCACAGCGGAGGAGCTCAAGGCCTACGACGGCACCGATCCCGAGAAGCCCTTGCTCATGGCCATCAAGGCCCAGATCTATGATGTCTCCCAGAGCAGgtttactgtctcacaaa-----acccacccctttgttccaaattgcatttttttaattttgattgtctacgctcattttaggttttgggtattttatttatttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18348128|gb|BJ180175.1|BJ180175EST: CCTTTGTTGATGGCCATCAAAGCTCAGATTTATGATGTTTCTCGGTCAAG GGCATTTTATGGACCTGGCGGACCATACGCACTCTTTGCTGGGAAAGACGC
genomic: CCTTTGTTGATGGCCATCAAAGCTCAGATTTATGATGTTTCTCGGTCAAGgtatgtgagg ... atcgtaacagGGCATTTTATGGACCTGGCGGACCATACGCACTCTTTGCTGGGAAAGACGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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AGATTACTGCAGAAGAACTTCGAGCCTACGATGGCACTGATCCCAATAAGCCTTTGTTGATGGCCATCAAAGCTCAGATTTATGATGTTTCTCGGTCAAGgtatgtgaggtgaaaggggtggatctattttgtcattcttatccattgttttgtgctttgttagttggacatccttctcttcaaagattcattgttgtga
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