1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAGATTCAAGTTTGGATTACGCCGCTAATTTTGCTCACATGTTGGGCTTTAAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaagctggatgcttaagataccttgtttttgtccttcaattttggtaatttactaatttgctaatatattgaaaccagagggctcaaagatat...
species | Physcomitrella patens |
transcript | PP1S37_33V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|208386538|gb|DC952747.1|DC952747
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|67697462|gb|BJ957695.1|BJ957695
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|208388659|gb|DC953435.1|DC953435
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|208363044|gb|DC957985.1|DC957985
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|162152561|gb|FC328839.1|FC328839
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|208356950|gb|DC922286.1|DC922286
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGGTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|162234310|gb|FC409848.1|FC409848
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTNTACGTGAGCATTCCCAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|162233299|gb|FC409849.1|FC409849
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTGEST: gi|162202112|gb|FC378033.1|FC378033
genomic: AAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
EST: AAGATGAG-TGNATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAG TGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
genomic: AAGATGAGTTG-ATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaa ... attgtgttagTGATCACGAAGGAGGCAATGTAAGCGCACACACTGTCCACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGATTCAAGTTTGGATTACGCCGCTAATTTTGCTCACATGTTGGGCTTTAAAGATGAGTTGATGCATGAGTTGATGCGCCTTTACGTGAGCATTCACAGgtattttcaagctggatgcttaagataccttgtttttgtccttcaattttggtaatttactaatttgctaatatattgaaaccagagggctcaaagatat
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG