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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGCGGTTCGCCGGTTTCAGCAAGGAGGATAAATCCTTGAATGCTGAGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgttttataacgaacttaagttctctttgtaatcacacttattttatcttatcaccgcgttatgaataatacattcaatgttataatcactggactttccttactatgtatcgtcattatagtacaagcttttgacctgtgtctatcatgttttcatacag

Basic information

species Physcomitrella patens
transcript PP1S371_31V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208382974|gb|DC927724.1|DC927724
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|67577808|gb|BJ949975.1|BJ949975
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|18334883|gb|BJ166900.1|BJ166900
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|67692369|gb|BJ952602.1|BJ952602
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|67700678|gb|BJ960911.1|BJ960911
EST:     GTCACGTTGCCGACTACATGAGG                         C-TTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: GTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|208373862|gb|DC956336.1|DC956336
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|18338022|gb|BJ170046.1|BJ170046
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|208360331|gb|DC949986.1|DC949986
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|67573313|gb|BJ946137.1|BJ946137
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|67696699|gb|BJ956932.1|BJ956932
EST:     AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: AGACACATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
EST: gi|67691558|gb|BJ951791.1|BJ951791
EST:     ATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC
genomic: ATCGCAAGTATATTTTGGGTGGTCACGTTGCCGACTACATGAGGgtacgtcgtt ... tttcatacagCTTTTGAAGGAAGATGAGCCTGAGAAATACCAATCTCATTTCAATAAATTC