1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGAAGGAGATTGTACTAAACGAGGATAATACTGTGAAACATTACTTACTTTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAGgtacttccggttactgaagcatcgtgactaagtgggtgtgctccgaacagggcagatctagagttcataataagtcagatgttttaagttgtgaacgttg...
species | Physcomitrella patens |
transcript | PP1S369_27V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAG TGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACTEST: gi|162187988|gb|FC364978.1|FC364978
genomic: TTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAGgtacttccgg ... attgttccagTGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACT
EST: TTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAG TGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACTEST: gi|208366040|gb|DC951185.1|DC951185
genomic: TTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAGgtacttccgg ... attgttccagTGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACT
EST: TGGAAGGGGGATGTGTATGTATCTGCGATGCCAG TGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACTEST: gi|162192389|gb|FC371658.1|FC371658
genomic: TGGAA-GGGGATGTGTATGTATCTGCGATGCCAGgtacttccgg ... attgttccagTGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACT
EST: TTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAG TGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACT
genomic: TTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAGgtacttccgg ... attgttccagTGGATATTGTGAAGCTCATTATACCTAACCAGTGGAAACCGATACCCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGGAGATTGTACTAAACGAGGATAATACTGTGAAACATTACTTACTTTCAGACGGGACTACAGTGGAAGGGGATGTGTATGTATCTGCGATGCCAGgtacttccggttactgaagcatcgtgactaagtgggtgtgctccgaacagggcagatctagagttcataataagtcagatgttttaagttgtgaacgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG