1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGAAAGATGGATTGTGAATCTTATCCGCAATGCGCGGTTGGACGCCAAGATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggattcttcccggtttagattattgtattcgttctaaagtttctattagaagatatgttggttcatcctctgtaggaatcattcaagatctgta...
species | Physcomitrella patens |
transcript | PP1S363_21V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|7583627|gb|AW699535.1|AW699535
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|162277674|gb|FC453305.1|FC453305
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|162234236|gb|FC409774.1|FC409774
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: TGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|162194164|gb|FC369481.1|FC369481
genomic: TGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|7207316|gb|AW561319.1|AW561319
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|18332715|gb|BJ164728.1|BJ164728
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|67723980|gb|BJ974239.1|BJ974239
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: TCGATTTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|7286516|gb|AW599003.1|AW599003
genomic: TCGATT-CAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|162194165|gb|FC369482.1|FC369482
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCANAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|37845565|gb|BJ603573.1|BJ603573
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGNCGAAGGTTCTTAGCCAGCGAAGTTACGCEST: gi|19790725|gb|BQ042022.1|BQ042022
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
EST: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATAT ATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
genomic: ATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggat ... ggtctatcagATATGAACAAATTATCGAGAAGACGAAGGTTCTTAGCCAGCGAAGTTACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAAGATGGATTGTGAATCTTATCCGCAATGCGCGGTTGGACGCCAAGATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgtggattcttcccggtttagattattgtattcgttctaaagtttctattagaagatatgttggttcatcctctgtaggaatcattcaagatctgta
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