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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGTTGTTGTTTTTCTACACTAGTTTAGCTCTGCGAGAAAACATTTTGAGGGTCAACGGTAGTGACATACGGCCATGgtacttttcttcactgaaccttccaacgatggttttcgttaagtttattcgttttgttggaggaagttccatcatcagcttttttggacggtccattatcatgcaggccctaatgcatttccatcaatttcgcgattcgtttggattatagtgggagaatgttgcattgatgtggcag

Basic information

species Physcomitrella patens
transcript PP1S359_2V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S359_2V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ12166 (Selaginella moellendorffii), 5'ss of exon 5
GCATGGTTGTTGTTTTTCTACACTAGTTTAGCTCTGCGAGAAAACATTTTGAGGGTCAACGGTAGTGACATACGGCCATGgtacttttcttcactgaaccttccaacgatggttttcgttaagtttattcgttttgttggaggaagttccatcatcagcttttttggacggtccattatcatgcaggccctaatgcatttccatcaatttcgcgattcgtttggattatagtgggagaatgttgcattgatgtggcag
|||||| || |||| |||||||| || || || ||||||||||||||| |  | || ||||| ||||||||||| ||||||||  | | || |       || |     | ||     || | ||   || || |     ||                                                                                                                    
GCATGGCTGCTGTTCTTCTACACCAGCTTGGCACTGCGAGAAAACATTCTTCGAGTGAACGGAAGTGACATACGTCCATGgtatgtgt-tttatcctgttttgcgttttttgtccgtcttgaattgtctctttgtcgctcag--------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67724944|gb|BJ975203.1|BJ975203
EST:     GCTCTGCGAGAAAACATTTTGAGGGTCAACGGTAGTGACATACGGCCATG                         GTGGGTGTATCATCATTATTGTGCAATGGTGATGGCACTGGTGAGTCTTAC
genomic: GCTCTGCGAGAAAACATTTTGAGGGTCAACGGTAGTGACATACGGCCATGgtacttttct ... gatgtggcagGTGGGTGTATCATCATTATTGTGCAATGGTGATGGCACTGGTGAGTCTTAC