1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAAGTCTCAATAGAGGAAGGGGATGCCAAGGCAAAGGAATTTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAGgtgaatatgtcctctcagctgcatttgctataagttccatgacttcaaataggtctgcgtttgctatacaatttgatgagaattcttcaattggaaaaccacgtttattgcatgcagttatatcaaattagttgcctgaagcgtgtaggaacttcctggtcaatttcgtgcag
species | Physcomitrella patens |
transcript | PP1S353_41V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGTCATGTTCATCGAAACTAGGTCTAAAGCTGGATTTAACATCAGG GCCCTTTTTCGGAAA-TCGCAGCAGCTCTGCCCGGGGATGGAGGCATTATCEST: gi|162272435|gb|FC449061.1|FC449061
genomic: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAGgtgaatatgt ... tttcgtgcagGCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGG-ATGGAGGCATTATC
EST: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAG GCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGGATGGAGGCATTATCTEST: gi|67692115|gb|BJ952348.1|BJ952348
genomic: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAGgtgaatatgt ... tttcgtgcagGCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGGATGGAGGCATTATCT
EST: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAG GCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGGATGGAGGCATTATCTEST: gi|162272434|gb|FC449060.1|FC449060
genomic: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAGgtgaatatgt ... tttcgtgcagGCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGGATGGAGGCATTATCT
EST: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAG GCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGGATGGAGGCATTATCT
genomic: TTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAGgtgaatatgt ... tttcgtgcagGCCCTTTTTCGGAAAATCGCAGCAGCTCTGCCCGGGATGGAGGCATTATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTCTCAATAGAGGAAGGGGATGCCAAGGCAAAGGAATTTGGAGTCATGTTCATCGAAACTAGTTCTAAAGCTGGATTTAACATCAAGgtgaatatgtcctctcagctgcatttgctataagttccatgacttcaaataggtctgcgtttgctatacaatttgatgagaattcttcaattggaaaaccacgtttattgcatgcagttatatcaaattagttgcctgaagcgtgtaggaacttcctggtcaatttcgtgcag
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA