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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGTATCAATTGAAGAAGGTGACGCCAAAGCCAAAGAGGTTGGTGTCATGTTTATTGAGACCAGTTCGAAAGCAGGTTTCAACATAAAGgtatgatcagtggatctagtctggttactcagaacagtatgtttctgggagctttaagatatcgaggaatcattaacttctggtgagtgagcgtagttgcatacgtagttgtgctcaatagtcagtctttcttagtgatcaacgatagatattgcttgctcaatgtaatgttgctgaacagttcattgtattattccag

Basic information

species Physcomitrella patens
transcript PP1S346_29V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S346_29V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G075719_T02 (Zea mays), 5'ss of exon 5
CCAAGTATCAATTGAAGAAGGTGACGCCAAAGCCAAAGAGGTTGGTGTCATGTTTATTGAGACCAGTTCGAAAGCAGGTTTCAACATAAAGgtatgatcagtggatctagtctggttactcagaacagtatgtttctgggagctttaagatatcgaggaatcattaacttctggtgagtgagcgtagtt-gcatacgtagttgtgctcaatagtcagtctttcttagtgatcaacgatagatattgcttgctcaatgtaatgttgctgaacagttcattgtattattccag
 ||||| || || || ||||| || | ||| || || ||  ||||||||||||||||||| |||||| | ||||| || || ||||| |||||||| |      || ||  ||| || ||     || |   |   | ||         |||| ||     |||   |||||    |  | ||  |  | |     |  | |                                                                                         
GCAAGTCTCGATAGAGGAAGGAGAAGGCAAGGCAAAGGACCTTGGTGTCATGTTTATTGAAACCAGTGCTAAAGCTGGGTTTAACATTAAGgtatgcttcagaaatataaactgcttgcttgtctcatttcataagttgggttc-----atattgaa----cat--gcttctaaaaaaagggcaaatctagtgccaggggct-----------------------------------------------------------------------------------------