1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CACACTGGTGCCCTACTATTTAACTGAAGAGGAGAATTGGGGAATGAGCATTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcctttctcgtgtttacgaacttctcatgtgtgttgtggtcctcagccgtcgaatctttcggaagaggacaattcattcaatggcagtaatgt...
species | Physcomitrella patens |
transcript | PP1S341_73V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTAEST: gi|162187116|gb|FC362898.1|FC362898
genomic: AGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
EST: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTAEST: gi|162158810|gb|FC335333.1|FC335333
genomic: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
EST: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTAEST: gi|162165683|gb|FC342250.1|FC342250
genomic: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
EST: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTAEST: gi|162245386|gb|FC421288.1|FC421288
genomic: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
EST: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTAEST: gi|162193527|gb|FC370430.1|FC370430
genomic: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
EST: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTAEST: gi|162171492|gb|FC346767.1|FC346767
genomic: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
EST: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGT GTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
genomic: TTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcc ... tcacattcagGTGCGAGGATTAGTATTTATAAACCCAGGTAATCCAACTGGTCAGTGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACACTGGTGCCCTACTATTTAACTGAAGAGGAGAATTGGGGAATGAGCATTAACGAGTTGCGTAGATCTGTTACTGAAGCTCGGAGGAAGGGAATTTGTgtaagcttcctttctcgtgtttacgaacttctcatgtgtgttgtggtcctcagccgtcgaatctttcggaagaggacaattcattcaatggcagtaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA