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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGTTTAATACGCATGGTGAAGAAATCAGGAATGAGAGCCAAACCTGAACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatactctttcactgtggactgtaccattgttgttaattcctcgttgcaattgcttttcagattctttgcgagttggtgtttgctgtctagattg...

Basic information

species Physcomitrella patens
transcript PP1S33_245V6.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162253722|gb|FC429836.1|FC429836
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|162236809|gb|FC413488.1|FC413488
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|208396907|gb|DC920447.1|DC920447
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|208381571|gb|DC923157.1|DC923157
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|208346127|gb|DC917080.1|DC917080
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|162253723|gb|FC429837.1|FC429837
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|162220029|gb|FC395375.1|FC395375
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
EST: gi|208382981|gb|DC927731.1|DC927731
EST:     ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGG                         GTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG
genomic: ACTTGGGCTTCATTTTCACGGAGGCGAAAACGCAGAACTTGGTTTCATGGgtatatatac ... atccatgcagGTGTAGAGAACCCTAACTGGGTAATAAAGCGGGCAGAACGTTACTTACAGG