1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACTGTTAGGTTCCATTTTGTCAAACATGTTGCTGGTTCTAGGATGTGCTTTTTTCTTTGGGGGCCTGAAACACTCTCAGAAAGATCAGAAGTTTAACAAGgtatgtgcgctgcagaaactgattacatatttcggatcacgtctattggagaggtttaatgtgatgctctttttgctgtgggtatactctccgtgtggtgggttatctagcgtagtgatcttctctcatttgttaaattgaatcagtcctgagaagttatggatgtcatctgttgtag
species | Physcomitrella patens |
transcript | PP1S336_18V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTTCTTTGGGGGCCTGAAACACTCTCAGAAAGATCAGAAGTTTAACAAG GTTACTGCCCAGGTCAGCGCAAGCCTGTTGTTGATGGCAGTCATGGGTCTTEST: gi|100431991|gb|BY978610.1|BY978610
genomic: TTTTCTTTGGGGGCCTGAAACACTCTCAGAAAGATCAGAAGTTTAACAAGgtatgtgcgc ... tctgttgtagGTTACTGCCCAGGTCAGCGCAAGCCTGTTGTTGATGGCAGTCATGGGTCTT
EST: TTTTCTTTGGGGGCCTGAAACACTCTCAGAAAGATCAGAAGCTTAACAAG GTTACTGCCCAGGTCAGCGCAAGCCTGTTGTTGATGGCAGTCATGGGTCTT
genomic: TTTTCTTTGGGGGCCTGAAACACTCTCAGAAAGATCAGAAGTTTAACAAGgtatgtgcgc ... tctgttgtagGTTACTGCCCAGGTCAGCGCAAGCCTGTTGTTGATGGCAGTCATGGGTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGTTAGGTTCCATTTTGTCAAACATGTTGCTGGTTCTAGGATGTGCTTTTTTCTTTGGGGGCCTGAAACACTCTCAGAAAGATCAGAAGTTTAACAAGgtatgtgcgctgcagaaactgattacatatttcggatcacgtctattggagaggtttaatgtgatgctctttttgctgtgggtatactctccgtgtggtgggttatctagcgtagtgatcttctctcatttgttaaattgaatcagtcctgagaagttatggatgtcatctgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT