1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCTACTTGACCTTCATGCTTACTGCTTGTGCGCTCTTCTCCAAGACCTGGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatttgaaacgatttaattgccgcgtgattgtagttgggttagacagcaaattaggtctattatattgaaggccttgatattccactgaactcagtcgcttttggtttaacag
species | Physcomitrella patens |
transcript | PP1S323_56V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGANATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|18341392|gb|BJ173427.1|BJ173427
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|208371446|gb|DC955782.1|DC955782
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37847016|gb|BJ605024.1|BJ605024
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATTTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37821396|gb|BJ579462.1|BJ579462
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37832704|gb|BJ590716.1|BJ590716
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: AGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37821747|gb|BJ579813.1|BJ579813
genomic: AGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|208370161|gb|DC951760.1|DC951760
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|208374672|gb|DC948644.1|DC948644
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37827746|gb|BJ585758.1|BJ585758
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37837683|gb|BJ595691.1|BJ595691
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37829525|gb|BJ587537.1|BJ587537
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37822184|gb|BJ580250.1|BJ580250
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|7047224|gb|AW477118.1|AW477118
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|18338671|gb|BJ170695.1|BJ170695
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37821435|gb|BJ579501.1|BJ579501
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|37834254|gb|BJ592266.1|BJ592266
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAAEST: gi|18337235|gb|BJ169259.1|BJ169259
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
EST: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAG GAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
genomic: GGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatt ... ggtttaacagGAACAACAAATGTTCATGCCTGGCCACCGTGAATCCAACCTTCAGAGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTACTTGACCTTCATGCTTACTGCTTGTGCGCTCTTCTCCAAGACCTGGATCGAAGTGTCAGGATCTTCTGCGCGAGATGTTGCCAAGCAGCTCAAGgtaattgatttgaaacgatttaattgccgcgtgattgtagttgggttagacagcaaattaggtctattatattgaaggccttgatattccactgaactcagtcgcttttggtttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA