1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGAATATTGATAGCAGTGATTGGAATGGGATTGTATTCGTATGCATGCGTGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatctttctccagatgttgaatgctaccaaccaaagatctatggaaatatgttgcatattgtgtagctgttgattgtgttatcgtatcacttggaagcaatattttgcatttaccgagcacgttttttttgtaatcggttggtaagcgtattttcttaaagctacttgaattaattagtggattgttgctcag
species | Physcomitrella patens |
transcript | PP1S311_78V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCCEST: gi|208370432|gb|DC952135.1|DC952135
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCCEST: gi|15262100|gb|BI437410.1|BI437410
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTTCEST: gi|208364189|gb|DC950425.1|DC950425
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCCEST: gi|208372757|gb|DC952644.1|DC952644
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCCEST: gi|15262207|gb|BI437517.1|BI437517
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCCEST: gi|208373626|gb|DC952451.1|DC952451
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCCEST: gi|37845882|gb|BJ603890.1|BJ603890
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
EST: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAG GTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
genomic: TGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatct ... tgttgctcagGTTTTAAAAGAGGATGTGCTATCTGTGTCTTTGGACACTGATGAGGTCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAATATTGATAGCAGTGATTGGAATGGGATTGTATTCGTATGCATGCGTGTTGGAAAGCCAGCAGAAAGCCGAAGAGCTACCCGTCTCATCATCTCAGgtatcaatctttctccagatgttgaatgctaccaaccaaagatctatggaaatatgttgcatattgtgtagctgttgattgtgttatcgtatcacttggaagcaatattttgcatttaccgagcacgttttttttgtaatcggttggtaagcgtattttcttaaagctacttgaattaattagtggattgttgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT