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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGGCTACCAAGATTCGGAAGCTCTTTAACCTCACCAAGGAGGATGACGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgattaataccctttccttcgcctgttgtcattttggtgaaatagcattagggttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcag

Basic information

species Physcomitrella patens
transcript PP1S311_33V6.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGGGCTACCAAGATTCGGAAGCTCTTTAACCTCACCAAGGAGGATGACGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgat-taataccctttccttcgcctgttgtcattttggtgaaatagcattagggttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcag
||||||||  | |||||||| ||||| ||||||||| | ||||||||||| || ||||| |||||||||||||| |||||  | |||    |     | |||   || | ||||  | |||     |     | | || |  ||  | |  |||||   ||      ||| | |   || ||   |    ||| ||  | |  |         
AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttctaatttcttttttgatgggaaatatgatat--gtttactgacattat--ttactaaagatgtat---gattggtcttatctgtgtgcctggcag---------

upper sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGGGCTACCAAGATTCGGAAGCTCTTTAACCTCACCAAGGAGGATGACGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatt-tgattaataccctttccttcgcctgttgtcattttggtgaa-atagcattagggttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcag
||||| ||| | |||||||| |||||||| |||||| | ||||||||||| || ||||| ||||| ||||| || || ||  | ||     ||    | ||||   |   | ||  | | || ||    | ||  | ||| |  |   |||     ||||      | |     ||||   | |   ||    |   ||||             
AAGAGAGCTTCTAAGATTCGAAAGCTCTTCAACCTCTCTAAGGAGGATGATGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcctgatttcttatctttttaatatttacttttagaagtttataagtgaagggaacaaattgtataatttaatttaattcctac-attgctttc-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162245101|gb|FC422927.1|FC422927
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|18339894|gb|BJ171921.1|BJ171921
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|37831873|gb|BJ589885.1|BJ589885
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|162220470|gb|FC396007.1|FC396007
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|162245074|gb|FC422926.1|FC422926
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|162220469|gb|FC396006.1|FC396006
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|15728503|gb|BI740820.1|BI740820
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|15730197|gb|BI741728.1|BI741728
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|7207711|gb|AW561708.1|AW561708
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|37844063|gb|BJ602071.1|BJ602071
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|37843893|gb|BJ601901.1|BJ601901
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
EST: gi|162206668|gb|FC382426.1|FC382426
EST:     CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCG                         GAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA
genomic: CGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgatt ... ggtttttcagGAAAGAAACGCAGCAAAGCTCCCAAAATTCAGAGACTAGTGACACCTCTTA