1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCTTGCAAGGCTTCTTCAGAGGAACAGGAGTGACCTTGTGTAGAGAAGTTCCTTTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAGAAGGCAGgtcatattcaaccactagctgattacacactgtaaatttgaacaacttcgtataaaagtcgaataaatcaagttgttctgcgaaggtcctactcacgataagtttcgcctgtttag
species | Physcomitrella patens |
transcript | PP1S2_777V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTTTTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAG-A---AG GTTGTCCGAAAGGTTCTGCACAGGGAGCTGCAACCATGGGAGACAATTGCCEST: gi|18341073|gb|BJ173106.1|BJ173106
genomic: CC-TTTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAGAAGGCAGgtcatattca ... gcctgtttagGTTGTCCGAAAGGTTCTGCACAGGGAGCTGCAACCATGGGAGACAATTGCC
EST: TTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAGAAGGCAG GTTGTCCGAAAGGTTCTGCACAGGGAGCTGCAACCATGGGAGACAATTGCCEST: gi|100448647|gb|CJ972946.1|CJ972946
genomic: TTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAGAAGGCAGgtcatattca ... gcctgtttagGTTGTCCGAAAGGTTCTGCACAGGGAGCTGCAACCATGGGAGACAATTGCC
EST: TCCTTTTTACGTTGCTGGCATGAGTATCTACNAGGAAGCTAANAANG--- -TTGTCCGAAAGGTNCTGCACAGGGAGCTGCAACCATGGGAG
genomic: TCCTTTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAGAAGGCAGgtcatattca ... gcctgtttagGTTGTCCGAAAGGTTCTGCACAGGGAGCTGCAACCATGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTTGCAAGGCTTCTTCAGAGGAACAGGAGTGACCTTGTGTAGAGAAGTTCCTTTTTACGTTGCTGGCATGAGTATCTACGAGGAAGCTAAGAAGGCAGgtcatattcaaccactagctgattacacactgtaaatttgaacaacttcgtataaaagtcgaataaatcaagttgttctgcgaaggtcctactcacgataagtttcgcctgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG