Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttggccgcacaggctttcatatataacaatctttacaacaaacttcctagagattgtttcatgttttccttgaaatcaacagcatttgatgaacatgatgttcctaatgtttgcag

Basic information

species Physcomitrella patens
transcript PP1S295_30V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354202|gb|DC957422.1|DC957422
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208392737|gb|DC953634.1|DC953634
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|100414507|gb|BY992807.1|BY992807
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|162260165|gb|FC436300.1|FC436300
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208363026|gb|DC946909.1|DC946909
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208367886|gb|DC950953.1|DC950953
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|162278111|gb|FC453930.1|FC453930
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208377957|gb|DC910961.1|DC910961
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208375008|gb|DC956404.1|DC956404
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208374777|gb|DC932046.1|DC932046
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|162278110|gb|FC453929.1|FC453929
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208349948|gb|DC913656.1|DC913656
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208361176|gb|DC954282.1|DC954282
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208399342|gb|DC924772.1|DC924772
EST:     CCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: CCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|37845291|gb|BJ603299.1|BJ603299
EST:     CCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: CCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208386340|gb|DC932836.1|DC932836
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
EST: gi|208387111|gb|DC941283.1|DC941283
EST:     GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGNNNNNNNNCGCAG                         TTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG
genomic: GTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 22 (downstream exon)
Score: 5

GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGCGTAGCGAAGTTTTTTTTCGCAGgtagagtttg ... atgtttgcagTTGTGTTCCTTATGGCGGCGCTTGGATTCTTAACTTACGGTGGAAG




<











<


<