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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGAAACCTCGTCAAACTCGTTGGTATATGTATAGAGGGGATGCGATGTTTAGTGTATGAACTCATCCCCAATGGCAGTGTTCAGTCACATTTGCATGgtaagcactactagcgctaataccaaatgctttttaaagcaagttgtgttggaatccagtggtgaaacttgtcaatgttacatgatcacatcagcttcga...

Basic information

species Physcomitrella patens
transcript PP1S293_24V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S293_24V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv11s0016g02150.t01 (Vitis vinifera), 5'ss of exon 10
CATCGAAACCTCGTCAAACTCGTTGGTATATGTATAGAGGGG---ATGCGATGTTTAGTGTATGAACTCATCCCCAATGGCAGTGTTCAGTCACATTTGCATGgtaagcactactagcgctaataccaaatgctttttaaagcaagttgtgttggaatccagtggtgaaa-cttgtcaatgttacatgatcacatcagcttcga----------
    ||||  | |||||  |  |||||||||||| ||||| |   |  || || ||||||||||||||||| || |||||||||||  |||| ||||| |||||||     | |      || ||  || |  |   |       |  ||| ||   |||| || | ||  ||  || |  ||  ||| | |   |   |||            
---AGAAATTTGGTCAAGTTAATTGGTATATGTACAGAGGAGCGTACCCGCTGCTTAGTGTATGAACTCATTCCAAATGGCAGTGTGGAGTCCCATTTACATGgtattattttcc--tcttagtat-aagttttgcattggctgtgaggtgatgttttccattgatcaattctcatcgaatttttatgtttattcctttttcatttgctctcag