1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTCTTCAGTCACCAACTTATTCTCCTGCTATAGATATGTGGGCAGTGGGGGCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatccgtcacttcagtttgattgacttgcttacattgatatgaaattgagcattgagtttctcgttcacttctggtttggataatttagaagac...
species | Physcomitrella patens |
transcript | PP1S28_184V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAG TGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCAEST: gi|100452665|gb|CJ975383.1|CJ975383
genomic: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatc ... ctggttacagTGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
EST: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAG TGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCAEST: gi|162171440|gb|FC346715.1|FC346715
genomic: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatc ... ctggttacagTGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
EST: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAG TGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCAEST: gi|100445020|gb|BY964319.1|BY964319
genomic: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatc ... ctggttacagTGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
EST: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAG TGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCAEST: gi|162169093|gb|FC345983.1|FC345983
genomic: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatc ... ctggttacagTGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
EST: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAG TGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCAEST: gi|100434800|gb|BY960838.1|BY960838
genomic: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatc ... ctggttacagTGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
EST: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAG TGAGGTCGATGAAATGTACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
genomic: GCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatc ... ctggttacagTGAGGTCGATGAAATATACAAAATCTGTTCTGTGATCGGGACTCCTACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTCAGTCACCAACTTATTCTCCTGCTATAGATATGTGGGCAGTGGGGGCTATAATGGCTGAACTTTTCACTTTTCGCCCACTTTTTCCTGGAGCAAGgtacagtatccgtcacttcagtttgattgacttgcttacattgatatgaaattgagcattgagtttctcgttcacttctggtttggataatttagaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG