1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaatcttttcaaattataatttgatgattgccttgcatagagattagccagccgttacgaaccgttgctcgagaaagttcaggttacaattcaatgttgtgtgcaggagtgtgtaaagtgtgttttgaactttgagagtgacgagatctctgaaagcaagtgggtccatgagcttgactgcag
species | Physcomitrella patens |
transcript | PP1S279_72V6.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG GTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAGEST: gi|208391821|gb|DC937997.1|DC937997
genomic: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaat ... ttgactgcagGTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAG
EST: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG GTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAGEST: gi|100406182|gb|BY991580.1|BY991580
genomic: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaat ... ttgactgcagGTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAG
EST: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG GTGGGCAC-AGCATTAGCGGCAGGGCTGCAC-ATAGTTTTEST: gi|100364783|gb|BY947906.1|BY947906
genomic: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaat ... ttgactgcagGTGG-CACCAGCATTAGCGGCAGG-CTGCACCATAGTTTT
EST: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG GTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAGEST: gi|19789205|gb|BQ041166.1|BQ041166
genomic: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaat ... ttgactgcagGTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAG
EST: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG GTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAGEST: gi|162257981|gb|FC433867.1|FC433867
genomic: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaat ... ttgactgcagGTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAG
EST: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG GTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAG
genomic: TAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaat ... ttgactgcagGTGGCACCAGCATTAGCGGCAGGCTGCACCATAGTTTTAAAACCAGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAGgtccttcaatcttttcaaattataatttgatgattgccttgcatagagattagccagccgttacgaaccgttgctcgagaaagttcaggttacaattcaatgttgtgtgcaggagtgtgtaaagtgtgttttgaactttgagagtgacgagatctctgaaagcaagtgggtccatgagcttgactgcag
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