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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGCTTCGTAGAGTACTACGCAGAAGAAGGAAAACGTGTGTTTGGTGATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgtcttgttacttttaactttatataacgtctccagtaatcttacactagagttaatcttgtggaaacgtttgcatcggaagacttgagttat...

Basic information

species Physcomitrella patens
transcript PP1S279_72V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162170327|gb|FC346524.1|FC346524
EST:     ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG                         GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: gi|208391821|gb|DC937997.1|DC937997
EST:     ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG                         GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: gi|19789205|gb|BQ041166.1|BQ041166
EST:     ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG                         GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: gi|100371823|gb|BY967570.1|BY967570
EST:     ATATTATACCCTCTCCTTTTCCAACTNAACGTATGCTAGTAATGAAACAG                         GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG