1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccctgctccacggatgttccctcaatattgttacaagttcgaaacatagtagaaaattggttggaagatttatgattagttttgttgatacga...
species | Physcomitrella patens |
transcript | PP1S276_27V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCTCTGTGCCTACGAACGATGGANAATGGGAAGTGAACTATCCAAGACA GTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCTEST: gi|208385972|gb|DC956810.1|DC956810
genomic: TCCTCTGTGCCTACGAACGATGGAGA-TGGGAAGTGAACTATCCAAGACAgtgagtaccc ... ttgttggcagGTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCT
EST: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACA GTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCTEST: gi|208372489|gb|DC948729.1|DC948729
genomic: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccc ... ttgttggcagGTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCT
EST: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACA GTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCTEST: gi|162181709|gb|FC358739.1|FC358739
genomic: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccc ... ttgttggcagGTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCT
EST: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACA GTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCTEST: gi|208364640|gb|DC935425.1|DC935425
genomic: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccc ... ttgttggcagGTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCT
EST: TTCCTCTGTGCCTACNAACGATGGANATGGGAAGTGAACTATCCAANACA GTGGCGACATNCATTGTTCAAAAAATCCTTCEST: gi|100389661|gb|BY952467.1|BY952467
genomic: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccc ... ttgttggcagGTGGCGACATTCATTGTTCAGAAAATCCTTC
EST: TTCCTCTGTGCCTACAAACGATGGAGATGGGGAGTGAACTATCCCAGACA GTGGCGACATTCATTGTTCAGAAAATT-TTCTAGACGACGTGGGTCTCGCT
genomic: TTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccc ... ttgttggcagGTGGCGACATTCATTGTTCAGAAAATCCTTCTAGACGACGTGGGTCTCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACAgtgagtaccctgctccacggatgttccctcaatattgttacaagttcgaaacatagtagaaaattggttggaagatttatgattagttttgttgatacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG