1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatgtaaatttgcgtttgttgcattgacagattcatcagacgtcacgctggatcacacttagtttgtagaaacaacttacaatttgcttcagtt...
species | Physcomitrella patens |
transcript | PP1S271_49V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTGEST: gi|208374444|gb|DC940717.1|DC940717
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
EST: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTGEST: gi|162240378|gb|FC419311.1|FC419311
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
EST: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTGEST: gi|208392443|gb|DC907920.1|DC907920
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
EST: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAG GATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
genomic: GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatg ... tggtttttagGATTTACCCGGAGCCCTCGATGCAGCTGCTGTTTCAGAGGCTTTGAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAAGAGCTGAAGGATTCTGTGATATTGATTTATGCAAATAAGCAGgtatgtcatgtaaatttgcgtttgttgcattgacagattcatcagacgtcacgctggatcacacttagtttgtagaaacaacttacaatttgcttcagtt
- GGAAGA
- - AGAGCT
- - - AGCTGA
- - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaacaa