1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTAGAGAAGAAATCTCTTATTGGCGGTGATGACTTCAAGAGCGGACAAACCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattcctaagcatctcgtttggttcactggaagtatccggttctctttaaatcgttttctatggtttgtcacgatgtatcctgttctgaatctctgaattattgtgcacag
species | Physcomitrella patens |
transcript | PP1S267_10V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAGGCATTAAG CCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAACEST: gi|162172373|gb|FC348314.1|FC348314
genomic: GCAGGCATTAAGgtgattccta ... ttgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAC
EST: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAG CCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAACEST: gi|162150742|gb|FC327014.1|FC327014
genomic: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattccta ... ttgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAC
EST: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAG CCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAACEST: gi|7047392|gb|AW477286.1|AW477286
genomic: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattccta ... ttgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAC
EST: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAG CCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAACEST: gi|162241553|gb|FC418614.1|FC418614
genomic: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattccta ... ttgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAC
EST: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAG CCCACCCTCA-TTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAEST: gi|162221112|gb|FC397753.1|FC397753
genomic: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattccta ... ttgtgcacagCCCACC-TCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAA
EST: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAG CCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAC
genomic: CCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattccta ... ttgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGAGAAGAAATCTCTTATTGGCGGTGATGACTTCAAGAGCGGACAAACCAAGATGAAATCTGTGCTTGTGGACTTCCTCGTTGGAGCAGGCATTAAGgtgattcctaagcatctcgtttggttcactggaagtatccggttctctttaaatcgttttctatggtttgtcacgatgtatcctgttctgaatctctgaattattgtgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG