1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGTATATCCAGACAATGAACCCTAGCGACGAAGACAAGTACGACTTCGACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattacatgtttggtgtttgaatgtggtggatagcatcctttgcttgtatgaaatgctacgatttcttttgtggtactgatatgatgcgaagaggcgatgctgataattttttctgcaattttgagtgcag
species | Physcomitrella patens |
transcript | PP1S259_126V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTNGGATAACTTCTTCAGCGAEST: gi|208375077|gb|DC956445.1|DC956445
genomic: CCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTT-GGATAACTTCTTCAGCGA
EST: AATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208363794|gb|DC943251.1|DC943251
genomic: AATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208392829|gb|DC957096.1|DC957096
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: CCCAATGGACACTACNTGCATNTGGNCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAEST: gi|208360610|gb|DC957849.1|DC957849
genomic: CCCAATGGACACTACCTGCATCTGG-CCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGT-GGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGA
EST: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208388440|gb|DC957050.1|DC957050
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: CAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208369501|gb|DC931697.1|DC931697
genomic: CAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208394053|gb|DC957134.1|DC957134
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: GGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATTGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208361228|gb|DC957697.1|DC957697
genomic: GGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208386921|gb|DC956918.1|DC956918
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: ACCCAATGGACANTACNTGCATCTGGCCGGAGGAGTTGTTTCCTNTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208394129|gb|DC957210.1|DC957210
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: CCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208389271|gb|DC933299.1|DC933299
genomic: CCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAATAAGAATTTGGATAACTTCTTCAGCGAGEST: gi|208377437|gb|DC927083.1|DC927083
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
EST: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAG CCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
genomic: ACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattac ... ttgagtgcagCCGGTGGGACGTATGGTGTTGAACAAGAATTTGGATAACTTCTTCAGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTATATCCAGACAATGAACCCTAGCGACGAAGACAAGTACGACTTCGACCCAATGGACACTACCTGCATCTGGCCGGAGGAGTTGTTTCCTCTGCAGgtaagattacatgtttggtgtttgaatgtggtggatagcatcctttgcttgtatgaaatgctacgatttcttttgtggtactgatatgatgcgaagaggcgatgctgataattttttctgcaattttgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG