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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTGGTTCTGCCAGTCCTCGGTGCTACCTTTGTCGCCATCACCCGGGTTGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaagacaccaacatctggtcatctgaaatatagaatttgagaaatctcaacagtgtgctctgggatcatttacatcaaagtggtcgtgaagttctgatcgagaagtttttttttctttttttttttttttttttag

Basic information

species Physcomitrella patens
transcript PP1S243_27V6.5
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338225|gb|BJ170249.1|BJ170249
EST:     TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: gi|162269879|gb|FC445396.1|FC445396
EST:     TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: gi|162232053|gb|FC409127.1|FC409127
EST:     TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: gi|37835783|gb|BJ593795.1|BJ593795
EST:     GACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: GACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: gi|162232054|gb|FC409128.1|FC409128
EST:     TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: gi|208351466|gb|DC926312.1|DC926312
EST:     TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTNTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
EST: gi|100420723|gb|BY993477.1|BY993477
EST:     TGACGACTACTGGCATCATTGGACTGATGGTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTAT
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTAT
EST: gi|208382440|gb|DC927974.1|DC927974
EST:     TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCG                         GGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG
genomic: TGACGACTACTGGCATCATTGGACTGATGTTTGCACTGGTGCCGCTATCGgtgagtgaag ... ttttttttagGGCTTCTTTCAGCGTATTTCTGCTACCGCCAACACTTCCCCAGTTTATTTG