1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGTTATTCCTTGTTGTTCGAAGCGAGCTTAACCTGGATCCCAAAAACCTCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatacttcagacagtagtgtagataccttcgagaagtcgacgtaggctgttaatattattctttttattccagttgctgccattcatagtcgcaagt...
species | Physcomitrella patens |
transcript | PP1S241_31V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAG ACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCAEST: gi|67569617|gb|BJ942441.1|BJ942441
genomic: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatactt ... gctgtggcagACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCA
EST: AGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAG ACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCAEST: gi|162191838|gb|FC367987.1|FC367987
genomic: AGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatactt ... gctgtggcagACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCA
EST: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAG ACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCAEST: gi|162169401|gb|FC345757.1|FC345757
genomic: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatactt ... gctgtggcagACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCA
EST: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAG ACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCAEST: gi|100401075|gb|BY973089.1|BY973089
genomic: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatactt ... gctgtggcagACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCA
EST: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAG ACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCA
genomic: TCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatactt ... gctgtggcagACAGAGTTGCTACTGCTGGCCCAGCTGACCAGAGAGGCGAGCAGTGTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTTATTCCTTGTTGTTCGAAGCGAGCTTAACCTGGATCCCAAAAACCTCAAGCAAGAACAAGCTAAATTCTGGAAAGGGCATCCTGCATTGATCAAGgtgcatacttcagacagtagtgtagataccttcgagaagtcgacgtaggctgttaatattattctttttattccagttgctgccattcatagtcgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT