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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGTTTACGCGATGCCATTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggatatgccttttgtcccggtacaatttgcgtaattttattgcattgtacttttgatgatattttggaatttagcacaattatttcgtcaacactactgaaaaatttgggtcgagacgttgagatgttgagacacctgcataaccaagcagatcttttgattggcag

Basic information

species Physcomitrella patens
transcript PP1S23_46V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841690|gb|BJ599698.1|BJ599698
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162165937|gb|FC340962.1|FC340962
EST:     CATGCTGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: CATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162193399|gb|FC368911.1|FC368911
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162260719|gb|FC435371.1|FC435371
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162161664|gb|FC339079.1|FC339079
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162263880|gb|FC438668.1|FC438668
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162205182|gb|FC381280.1|FC381280
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162196916|gb|FC373308.1|FC373308
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162165470|gb|FC340581.1|FC340581
EST:     TCGCAGTGGCATGCAGGAATTGGAC-TGNCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TCGCAGTGGCATGCAGGAATTGGACTTG-CAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162191850|gb|FC367999.1|FC367999
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162260718|gb|FC435370.1|FC435370
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162174387|gb|FC350458.1|FC350458
EST:     CATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: CATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162193398|gb|FC368910.1|FC368910
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
EST: gi|162205183|gb|FC381281.1|FC381281
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAG
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAG
EST: gi|6102178|gb|AW126648.1|AW126648
EST:     TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTNTGAGTTAGCACGGAC
genomic: TTCGCAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTT-TGAGTTAGCACGGAC
EST: gi|162161663|gb|FC339078.1|FC339078
EST:     CAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCA                         GTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA
genomic: CAGTGGCATGCAGGAATTGGACTTGCAGCAGGTCATCAGTGATGCAgtaagtggat ... tgattggcagGTGAAGCGAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACA