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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTGATAAAGCGGAGTCTATGTTGCATAGCTTGAAGTTACGGTTCCCAGGGTTGCCACAAACCGCCCTTGATATGAACAAGATTCAGTATAACAAGgtagtcgcatccccgtgtcaattttttgtttgcttgtcatagttgacgtttatttgcatcccaatgttatccttttggaatctgcccgtgatgaactgtaatctacatcatgtgaggctgtagtcgtctctgcaattcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtag

Basic information

species Physcomitrella patens
transcript PP1S22_225V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_225V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os09g37270.2 (Oryza sativa), 5'ss of exon 3
GATTG-CTGATAAAGCGGAGTCTATGTTGCATAGCTTGAAGTTACGGTTCCCAGGGTTGCCACAAACCGCCCTTGATATGAACAAGATTCAGTATAACAAGgtagtcgcatccccgtgtcaattttttgtttgct-tgtcatagttgacgtttatttgcatcccaatgttatccttttggaatctgcccgtgatgaactgtaatctacatcatgtgaggctgtagtcgtctctgcaattcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtag
  ||| |  | | ||| ||     ||||||| ||||| |  || || | ||| || |||||||||||| | || || ||||||||||| ||||||||||||||  |    ||| |   |    | || |||   | ||||| |   |  |   | |||   |  |  |||| | || |    |     |    |  | | | ||| |                                                                                      
-TTTGTCCCAAAGAGCTGATGGGTTGTTGCAAAGCTTAAGATTGCGATACCCTGGTTTGCCACAAACCTCTCTCGACATGAACAAGATCCAGTATAACAAGgttat----tcctcacattttatcttagttgaatatgtcaaacaagttgggcacttggg-cttagagttagcattgtatggttcattcaccttctatt-tcatcaa--------------------------------------------------------------------------------------

upper sequence: PP1S22_225V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G105253_T03 (Zea mays), 5'ss of exon 3
GATTG-CTGATAAAGCGGAGTCTATGTTGCATAGCTTGAAGTTACGGTTCCCAGGGTTGCCACAAACCGCCCTTGATATGAACAAGATTCAGTATAACAAGgtagtcgcatccccgtgtcaattttttgtttgcttgtcatagttgacgtttatttgcatcccaatgttatccttttggaatctgcccgtgatgaactgtaatctacatcatgtgaggctgtagtcgtctctgcaattcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtag
  ||| |||| | |||  |   | | ||||| ||| | |  ||  | |  || ||  ||||||||||| ||||||| ||||||||||| |||||||||||||||    |    |   | ||| |       | ||| |  | |   |     | |||      || ||  |  | ||  ||| | |     |  ||   |||| | ||   |||     || |    || | |                                                           
-TTTGTCTGAAAGAGCTAATGGTCTATTGCAGAGCCTAAGATTGAGATATCCTGGTCTGCCACAAACCTCCCTTGACATGAACAAGATCCAGTATAACAAGgtaaagcctgtgcaaagacaagtaaccacctacttattctggccaaaacacaattga----taaagtctttttctttcaat-tac-----acaaatcataatattcactttgtttctttgaaaatttcccag-----------------------------------------------------------

upper sequence: PP1S22_225V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G158679_T01 (Zea mays), 5'ss of exon 4
GATTG-CTGATAAAGCGGAGTCTATGTTGCATAGCTTGAAGTTACGGTTCCCAGGGTTGCCACAAACCGCCCTTGATATGAACAAGATTCAGTATAACAAGgtagtcgcatccccgtgtcaattttttgtttgcttgtcatagttgacgtttatttgcatcccaatgttatccttttggaatctgcccgtgatgaactgtaatctacatcatgtgaggctgtagtcgtctctgcaattcatttttatgtcgttgctattggagctgactgggttttcgtcttctgcacgtag
  ||| |||| | ||| ||   | | ||||| ||||| |  ||  | |  |||||  ||||||||||  ||||||| ||||||||||| |||||||||||||||         |     ||| |     |   ||| |  |   || |    ||    |||       | |   |||    |   |     |  | ||  | | |   || || | |  | |||                                                                    
-TTTGTCTGAAAGAGCTGATGGTCTATTGCAGAGCTTAAGATTGAGATATCCAGGCCTGCCACAAACTTCCCTTGACATGAACAAGATACAGTATAACAAGgtaaagctcatgcaaaaacaaataaccatggacttcttct--ctggc-caaatcaaaatcgatcaagtctttctttcagttacacaaaccacaatcttcactttgtttcttgcgtgtttttag--------------------------------------------------------------------