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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAATTGACGAAGAAACATGAGAAAGCATTTTCTGAAATAAAATGTTACTACAATGATATCACCCACAACAACCTGGACTTGATTAAAGTTCTGAAAgtatgacaatgtgtgccatgatccttcaagctgcgtcttgcaccagttacctataatgtccaagtgttccttgaaacaggagtgtttaattacatcacaacttcaaatttcttcccaatcagttgctgtgagtactgcag

Basic information

species Physcomitrella patens
transcript PP1S229_47V6.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S229_47V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EDP00235 (Chlamydomonas reinhardtii), 5'ss of exon 8
GCTGGAATTGACGAAGAAACATGAGAAAGCATTTTCTGAAATAAAATGTTACTACAATGATATCACCCACAACAACCTGGACTTGATTAAAGTTCTGAAAgtatgacaatgtg--tgccatgatccttcaagctgcgtcttgcaccagttac-ctataatgtccaagtgttccttgaaac---aggagtgtttaattacatcacaacttcaaatttcttcccaatcagttgctgtgagtactgcag
    ||| ||| |||||| || |||   || ||  | || || ||    ||||||||||| ||||| ||||||||||||||| |||| ||    || || ||       | |   ||    ||  ||  ||       |   | | |  ||  || |  ||  | |     |   |   |   |||||||      |  ||||                                           
CAACGAACTGATGAAGAAGCACGAGCGCGCCTTCGCAGAGATCAAGAACTACTACAATGACATCACACACAACAACCTGGACCTGATCAAGACGCTCAAGgtgctttggtttttttggggggaggctctaaa--aaagcaaactctaaatatgctgtgctgcacgacaagccgccggggcttcaggagtgg--ggctgtatcat------------------------------------------

upper sequence: PP1S229_47V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ10947 (Selaginella moellendorffii), 5'ss of exon 5
GCTGGAATTGACGAAGAAACATGAGAAAGCATTTTCTGAAATAAAATGTTACTACAATGATATCACCCACAACAACCTGGACTTGATTAAAGTTCTGAAAgta---------tgacaatgtgtgccatgatccttcaagctgcgtcttgcac-cagttacctataatgtccaagtgttccttgaaacaggagtgtttaattacatcacaacttcaaatttcttcccaatcagttgctgtgagtactgcag
    ||  | |  || || || || ||||| || |||||||| ||||| ||||||||||||||||| || |||||||| ||| | |||||    ||||| |||         |||    ||| |    |    |  |||||||| |||| |  |||                                                                                              
TTCAGAGCTTATAAAAAAGCACGAAAAAGCTTTCTCTGAAATCAAATGCTACTACAATGATATCACTCAGAACAACCTTGACCTCATTAAGACGCTGAAGgtaccttttgtttgagcgcgtgagtgccgtctttctaagctgcgccttgaaaacag----------------------------------------------------------------------------------------------

upper sequence: PP1S229_47V6.2 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ25876 (Selaginella moellendorffii), 5'ss of exon 6
GCTGGAATTGACGAAGAAACATGAGAAAGCATTTTCTGAAATAAAATGTTACTACAATGATATCACCCACAACAACCTGGACTTGATTAAAGTTCTGAAAgta---------tgacaatgtgtgccatgatccttcaagctgcgtctt-gcaccagttacctataatgtccaagtgttccttgaaacaggagtgtttaattacatcacaacttcaaatttcttcccaatcagttgctgtgagtactgcag
    ||  | |  || || || || ||||| || |||||||| ||||| ||||||||||||||||| || |||||||| ||| | |||||    ||||| |||         |||    ||| |    |    |  |||||||| |||   | |||                                                                                              
TTCAGAGCTTATAAAAAAGCACGAAAAAGCTTTCTCTGAAATCAAATGCTACTACAATGATATCACTCAGAACAACCTTGACCTCATTAAGACGCTGAAGgtaccttttgtttgagcgcgtgagtgccgtctttctaagctgcgcctttaaaacag----------------------------------------------------------------------------------------------