1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATCATCTGAAGTTTTGAGTTCTGAGTTAGGTTCCCTATTTACAGAAGACCAACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctccacttgatcctatgatgcgtttgtggtttattcgatttagaagtaggccataaactattcggatctttatctgacattcatcttgtgatcaataaaatcttcgcatgctctcagaatttactgtttgatgttctggtctgtggtattcggtgcag
species | Physcomitrella patens |
transcript | PP1S222_130V6.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGANEST: gi|162220370|gb|FC395738.1|FC395738
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGA-
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCGTTTTCTTTGTACCTATCTGGEST: gi|162257683|gb|FC433610.1|FC433610
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTT-CTTTGTACCTATCTGG
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCGTTTCTTEST: gi|162263641|gb|FC440125.1|FC440125
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTT
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGACEST: gi|162168431|gb|FC344407.1|FC344407
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCEST: gi|162149665|gb|FC326716.1|FC326716
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACC
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGACEST: gi|162162513|gb|FC338607.1|FC338607
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
EST: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTG TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
genomic: AACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctcca ... ttcggtgcagTTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATCTGAAGTTTTGAGTTCTGAGTTAGGTTCCCTATTTACAGAAGACCAACTTTATCGTATCGATCATTATCTGGGGAAAGAGCTCGTGCAGAATCTGgtatgctccacttgatcctatgatgcgtttgtggtttattcgatttagaagtaggccataaactattcggatctttatctgacattcatcttgtgatcaataaaatcttcgcatgctctcagaatttactgtttgatgttctggtctgtggtattcggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT