Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCAACTGGAGATGAGGCTTACAATCCTGATGGGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgcttaacaattcgtttctcagtgtggtccttgtcagtaattctggtttcttgggtcttcttttaaaaacgaattaaaacatgtccgtacgag...

Basic information

species Physcomitrella patens
transcript PP1S219_94V6.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162270289|gb|FC447301.1|FC447301
EST:     CAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: CAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162250292|gb|FC425946.1|FC425946
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162166620|gb|FC343512.1|FC343512
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|100384135|gb|BY950521.1|BY950521
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162154906|gb|FC331948.1|FC331948
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162186428|gb|FC362984.1|FC362984
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162166262|gb|FC342855.1|FC342855
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162150373|gb|FC326645.1|FC326645
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162157382|gb|FC333484.1|FC333484
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162179122|gb|FC355587.1|FC355587
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|208373778|gb|DC956294.1|DC956294
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGA-TTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|208394292|gb|DC904112.1|DC904112
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCNNNNNNNN-TTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACC-TTACTCTTCGAACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162150767|gb|FC327039.1|FC327039
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162177008|gb|FC353685.1|FC353685
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162270868|gb|FC446897.1|FC446897
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
EST: gi|162156546|gb|FC332154.1|FC332154
EST:     GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTG                         GTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT
genomic: GGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgc ... atcctttcagGTGATTTACACAGACGTCGCGCTGGACCCTTACTCTTCGGACGGTCACGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCAACTGGAGATGAGGCTTACAATCCTGATGGGCTGGTGCCACGGTGCATTCGCTTACTCAAAGACAAATTCCCTGACCTGgtaattttgcttaacaattcgtttctcagtgtggtccttgtcagtaattctggtttcttgggtcttcttttaaaaacgaattaaaacatgtccgtacgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacgaa