1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGATGCCAACACAATTGACTTCATTGGGCATTCTTTGGCGTTGCATCGTGACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgcctttatttcctgctaacacactccctgttatagctcattctgtttaatccacacgttatcttcacaagatttttatcagctctacagttttgttcgctacaacctgagttgtcttttttttcttggtgcag
species | Physcomitrella patens |
transcript | PP1S20_16V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAG TTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATEST: gi|162196487|gb|FC375440.1|FC375440
genomic: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgccttt ... cttggtgcagTTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTAT
EST: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAG TTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATEST: gi|162187203|gb|FC363153.1|FC363153
genomic: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgccttt ... cttggtgcagTTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTAT
EST: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAG TTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATEST: gi|162229881|gb|FC404334.1|FC404334
genomic: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgccttt ... cttggtgcagTTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTAT
EST: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAG TTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATEST: gi|162257732|gb|FC433659.1|FC433659
genomic: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgccttt ... cttggtgcagTTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTAT
EST: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAG TTGTACGCAGAGTCAATGGCCCGGTTTCA-GGAGGATCACCTTACATCTAT
genomic: ACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgccttt ... cttggtgcagTTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGCCAACACAATTGACTTCATTGGGCATTCTTTGGCGTTGCATCGTGACGATCGTTTCTTGTCTGAGCCAGCGTTGGATACAGTGAAGAGAGTGAAGgtatgcctttatttcctgctaacacactccctgttatagctcattctgtttaatccacacgttatcttcacaagatttttatcagctctacagttttgttcgctacaacctgagttgtcttttttttcttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA