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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAAGATTGCTGGTGGTCACACACAAGTCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaactccgccattccacgttggcaataagtgaatgttcagatcttagtgatttggactagtgcagtaccaatgctgtttttcattcttttctcttatgcttgaaagtgatttcatgtgctgccatggatgattcctggctcgattattcttgacaagcttgatgtttcgcttgtgctgtggcag

Basic information

species Physcomitrella patens
transcript PP1S205_59V6.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208381557|gb|DC923143.1|DC923143
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162165614|gb|FC341453.1|FC341453
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|208376776|gb|DC918731.1|DC918731
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162200281|gb|FC376322.1|FC376322
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162200282|gb|FC376323.1|FC376323
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162255054|gb|FC430927.1|FC430927
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162168295|gb|FC344609.1|FC344609
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTTAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|67695588|gb|BJ955821.1|BJ955821
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|67693124|gb|BJ953357.1|BJ953357
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162165615|gb|FC341454.1|FC341454
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162248720|gb|FC424573.1|FC424573
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTTTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162258766|gb|FC434565.1|FC434565
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|162181475|gb|FC358089.1|FC358089
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|208394748|gb|DC924079.1|DC924079
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|13251350|gb|BG362314.1|BG362314
EST:     AGCTCTAGTTCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: AGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
EST: gi|37849627|gb|BJ607635.1|BJ607635
EST:     TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAG                         GTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA
genomic: TCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaact ... gctgtggcagGTTCAGAGGAGTTGATGTGCATAATGCGGGGGTTTCAACCTTCACCGTTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGAAAGATTGCTGGTGGTCACACACAAGTCCATATTGCGAGCCATGCTGTGTACAGCTCTAGGCCTTGGGCCTGACAGgtattgaactccgccattccacgttggcaataagtgaatgttcagatcttagtgatttggactagtgcagtaccaatgctgtttttcattcttttctcttatgcttgaaagtgatttcatgtgctgccatggatgattcctggctcgattattcttgacaagcttgatgtttcgcttgtgctgtggcag

- - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC