Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGAAAGGATAGAAATATCTGTCTTGAAGATTGGAAAGCACATACTGAATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtgaagattatttctgttcataaactgccatttttcttggtgctttgtttttagtgggctccagagggaagcttctccgtgttggctttgcgtaagtgat...

Basic information

species Physcomitrella patens
transcript PP1S205_47V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S205_47V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA17G01210.1 (Glycine max), 5'ss of exon 3
GTATGGAAAGGATAGAAATATCTGTCTTGAAGATTGGAAAGCACATACTGAATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtg-aagattatttctgttcataaactgcca--tttttcttggtgctttgtttttagtgggctccagagggaagcttctccgtgttggctttgcgtaagtgat--
| |||| |  ||    |  || | | ||||||||||||||||||||||||| ||  ||| |||    |  || ||   | |||||   ||||| ||| ||||    |  || | || ||  | ||     |  | | |||   || ||| | ||       | ||   |     | |||    | | |        ||||     
GCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACATACTGAGTATAATGGCTATAAAGATACAGATATTCACATATCTTGGTTTTGGGAGgtatgtgcatactgctattattgaatcaaaaagtctgtctctatgttttatcttcc-----cccccccgccccccctctagtggctagtgggaaacaagtacctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153592|gb|FC329647.1|FC329647
EST:     AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAG                         GTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
genomic: AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtgaagatta ... gaattgacagGTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
EST: gi|162150646|gb|FC327542.1|FC327542
EST:     AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAG                         GTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
genomic: AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtgaagatta ... gaattgacagGTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
EST: gi|37835245|gb|BJ593257.1|BJ593257
EST:     AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAG                         GTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
genomic: AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtgaagatta ... gaattgacagGTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
EST: gi|162275140|gb|FC451727.1|FC451727
EST:     AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAG                         GTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
genomic: AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtgaagatta ... gaattgacagGTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
EST: gi|162275139|gb|FC451726.1|FC451726
EST:     AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAG                         GTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA
genomic: AATACCATGACTACTGTGTAACCGACGATTACATAGTCTGGTTCTGGCAGgtgaagatta ... gaattgacagGTTGTGGAAAAAATGACTTCATATGAGCGTAGAAGACTTCTCTTCTTTTCA