1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCCCGTCTGGATGCTATTTGGGATGAGAGCTTTTCTAGAAATGAAACCTTTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAGgtatgcatagtttgtgacaggatactgatttgaatttcttaggcatgattataagaatgcagtattttgttgtcacttttttgaagtgtcttgtactagcaaaaatattgctgattattggtgcatggtttttcag
species | Physcomitrella patens |
transcript | PP1S204_102V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAG AACCGACCTGCCGAGCTCATAGCGAAATTCATTGATGGAAAGCTGCGTGCTEST: gi|162170718|gb|FC346305.1|FC346305
genomic: TTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAGgtatgcatag ... ggtttttcagAACCGACCTGCCGAGCTCATAGCGAAATTCATTGATGGAAAGCTGCGTGCT
EST: TTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAG AACCGACCTGCCGAGCTCATAGCGAAATTCATTGATGGAAAGCTGCGTGCTEST: gi|100396690|gb|BY953778.1|BY953778
genomic: TTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAGgtatgcatag ... ggtttttcagAACCGACCTGCCGAGCTCATAGCGAAATTCATTGATGGAAAGCTGCGTGCT
EST: TTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAG AACCGACCTGCCGAGCTCATAGCGAAATTCATTGATGGAAAGCTGCGTGCT
genomic: TTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAGgtatgcatag ... ggtttttcagAACCGACCTGCCGAGCTCATAGCGAAATTCATTGATGGAAAGCTGCGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCGTCTGGATGCTATTTGGGATGAGAGCTTTTCTAGAAATGAAACCTTTGCTAATACTTTGAAGGATGCATTCGAACATCTCATTAATCTGCGTCAGgtatgcatagtttgtgacaggatactgatttgaatttcttaggcatgattataagaatgcagtattttgttgtcacttttttgaagtgtcttgtactagcaaaaatattgctgattattggtgcatggtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG