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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCTGTAAATATATTGGATGCATATGAAGGAACTTTGGAAGAGGATTTTCCTCCTGAAAGTGAGCGGTATGAGCACAGTGAAATGCTCCTTTATAAGgtaatgaggtttacggacgtcccagtggtatagacgttacagtgttgatgttggaaaaacatccaagcattttagatgtcttagacagctttgcttttaa...

Basic information

species Physcomitrella patens
transcript PP1S201_47V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S201_47V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os01g43030.2 (Oryza sativa), 5'ss of exon 6
GATGGCTGTAAATATATTGGATGCATATGAAGGAACTTTGGAAGAGGATTTTCCTCCTGAAAGTGAGCGGTATGAGCACAGTGAAATGCTCCTTTATAAGgt----aatgaggtttacggacgtcccagtggtatagacgttacagtgttgatgt-tggaaaaacatccaagcattttagatgtcttagacagctttgcttttaa
 | |||  || |  ||||||| |||||||| || ||  ||||||| |||| ||| || || | |||||| ||||| |||||||||||||| || ||||||||        |  ||  |     |  | | | |||    |    ||   || |||    | | |||| ||  | ||   ||      |   | |    |      
CAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGATGATTATCCCCCAGAGAATGAGCGATATGAACACAGTGAAATGCTTCTGTATAAGgtgcctgtcaaaattctcttgtatttctgggatatgattgcggtagcaatgctgtacttatacacattcacactttcatgaacaacgaattatcaggaca-----

upper sequence: PP1S201_47V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 6
GATGGCTGTAAATATATTGGATGCATATGAAGGAACTTTGGAAGAGGATTTTCCTCCTGAAAGTGAGCGGTATGAGCACAGTGAAATGCTCCTTTATAAGgtaatgaggtttacggacgtcccagtggtatagacgttacagtgttgatgttggaaaaacatccaagcattttagatgtcttagacagctttgcttttaa--------
 |  || ||  | || ||||| ||||||||||| |||||||||||||||  |||||| |||| ||| |||| ||||||  | ||||||||  | || |||||  |      |  ||  ||     || |   |    |    | || |||   ||     || ||   ||||  | ||  | |   | ||||     |||        
CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgtttt----cctctggcagtgtgtttgctgctgttacttt--ttttaatgcatgatgcttattcagatattt--ggtgcttcatgtaacttttaccgtaattagcttt

upper sequence: PP1S201_47V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 6
GATGGCTGTAAATATATTGGATGCATATGAAGGAACTTTGGAAGAGGATTTTCCTCCTGAAAGTGAGCGGTATGAGCACAGTGAAATGCTCCTTTATAAGgtaatgaggtttacggacgtcc-cagtggtatagacgttacagtgttgatgttggaaaaacatccaagcattttagatgtcttagacagctttgcttttaa
 |  || ||  | || ||||| ||||||||||| |||||||| ||||||  |||||| |||| ||| |||| ||||||  | ||||||||  | || |||||  |    |    |   ||   |||  || |     |||  |  ||    ||    ||| ||    || |  |  |  | |||      || |||||   
CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGATGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggctgtgtgtttgcagctgtttcttttttaatgcattatgcttattcaaatattggtgcttgatgtagcttttactgtaattagctttct-