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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTCTCGATATTGTGGAAAGCGTTAATCTTCTCATGTCTCAGAAGGgtaggtctttacatatcgtgaaagtacaatcattggccttcgttatagtcctttgtagaacccagttctttgtaaaagtgaaggtaattaaaccacatta...

Basic information

species Physcomitrella patens
transcript PP1S197_28V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S197_28V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 6
GTCTTTCTCGATATTGTGGAAAGCGTTAATCTTCTCATGTCTCAGAAGGgtaggtctttacatatcgtgaaagtacaatcattg-gccttcgttatagtcctttgtagaacccagttctttgtaaaagtgaaggtaattaaaccacatta
|| ||||| |||||||||||||| ||||||||||| ||||||   || |||   |  |    | | |  | | |     || ||    |  |||    | ||| ||| ||    ||  || |||                          
GTGTTTCTGGATATTGTGGAAAGTGTTAATCTTCTAATGTCTTCCAAAGgtgaatgctgttct-tggaaatattttgtgcaatgcatttctgtttgcttacttagtaaaatttggtgatt-gtag-------------------------