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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCGTCTGATGTCACGTCCACACTTGAGGGTGGAGAGCTACATGCAGATTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttcttacacagcttctctcattggcaatgttcatggctatacatggtttggtaatcttggaatttgtggtcaggacacacacacacacacaca...

Basic information

species Physcomitrella patens
transcript PP1S18_8V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188273|gb|FC364767.1|FC364767
EST:     TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA                         TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
EST: gi|208372439|gb|DC952283.1|DC952283
EST:     TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA                         TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
EST: gi|162268231|gb|FC444520.1|FC444520
EST:     TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA                         TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
EST: gi|162268232|gb|FC444521.1|FC444521
EST:     TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAA                         TTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA
genomic: TTGTGTTTATGGTCGCTTCGGGTTCTCTCTGCCTTCCAGTCATCATCCAAgtgagttttc ... tttgttgcagTTCTTTTTGCCGGATTCGCCCTCGGCTAGCATTACGGCTGGGGGGCGACTA