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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCACTGCAAAAAGTGATGTTTATAGTTTCGGTGTGCTTCTTTTTGAGCTTATCACTGCCCGTAACCCACAACAAGGGTTAATGGACTACGTTCACCTAgtatgcccttgactcaacatctttctttttatcgtgcttagttatgaatggcctcctagaatacttgtcctgaattttctgtttaagttgtattggttaa...

Basic information

species Physcomitrella patens
transcript PP1S18_53V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S18_53V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA08G06620.1 (Glycine max), 5'ss of exon 6
CTTCACTGCAAAAAGTGATGTTTATAGTTTCGGTGTGCTTCTTTTTGAGCTTATCACTGCCCGTAACCCACAACAAGGGTTAATGGACTACGTTCACCTAgtatgcccttgactcaacatctttcttttta---tcgtgctta----gttatgaatg-gcctcctagaatacttgtcctgaattttctgtttaagttgtattggttaa--------------------------
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CTTCACTAAGAAAAGCGATGTTTATAGTTTTGGTGTGCTACTGTTTGAACTTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacagta-tctgcttgttggtttctatgtttgtgcttgtgctgtggtgcatgagtgtatcttgatgcgtttgaaaatatatgtaagcaaatacttaggattgacacagcatttttctggttatgattag