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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGGGATTTGCGGCGGAAGTTAACGAGCCGAGGAGCTAACGTTTTAGCCCATACCTTGTTGTGGCCTCGTGTATCTGATTTGACTGGCTCTTTCAGgtaaaagattgtagctatgccttacctatgaaaaggacgtgcaattgttcaacttcccttgttaaggttctaaagtagagcttgttggaccaagatgaataggactgattggatgcgtgcactttcaatgcgtttagtgcgggttttattgttatggtttggcatgagttcatagcatgtcctttgacag

Basic information

species Physcomitrella patens
transcript PP1S182_58V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S182_58V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ26177 (Selaginella moellendorffii), 5'ss of exon 6
ATGGTTGGGATTTGCGGCGGAAGTTAACGAGCCGAGGAGCTAACGTTTTAGCCCATACCTTGTTGTGGCCTCGTGTATCTGATTTGACTGGCTCTTTCAGgtaaaagattgtagctatgccttacctatgaaaaggacgtgcaattgttcaacttcccttgttaaggttctaaagtagagcttgttggaccaagatgaataggactgattggatgcgtgcactttcaatgcgtttagtgcgggttttattgttatggtttggcatgagttcatagcatgtcctttgacag
|||| ||||||||   ||| ||| | |||||| ||||||| |||||  | || || ||  |  | |||||||| || || |||||||||||||||||||||| | |   | | ||| | ||    || ||    |  ||   ||   |    |||  ||||                                                                                                                                 
ATGGCTGGGATTTCAAGCGCAAGCTCACGAGCAGAGGAGCCAACGTACTGGCACAGACACTTCTCTGGCCTCGCGTCTCCGATTTGACTGGCTCTTTCAGgtcagatgatttggct-ttccagttctgtg----gctcgcttaacgctct--cttgtcttgcag------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S182_58V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ05561 (Selaginella moellendorffii), 5'ss of exon 6
ATGGTTGGGATTTGCGGCGGAAGTTAACGAGCCGAGGAGCTAACGTTTTAGCCCATACCTTGTTGTGGCCTCGTGTATCTGATTTGACTGGCTCTTTCAGgtaaaagattgtagctatgccttacctatgaaaaggacgtgcaattgttcaacttcccttgttaaggttctaaagtagagcttgttggaccaagatgaataggactgattggatgcgtgcactttcaatgcgtttagtgcgggttttattgttatggtttggcatgagttcatagcatgtcctttgacag
|||| ||||||||   ||| ||| | |||||| ||||||| |||||  | || || ||  |  | |||||||| || || |||||||||||||||||||||| | |   | | ||| | ||    || ||    |  ||   ||   |    |||  ||||                                                                                                                                 
ATGGCTGGGATTTCAAGCGCAAGCTCACGAGCAGAGGAGCCAACGTACTGGCACAGACACTTCTCTGGCCTCGCGTCTCCGATTTGACTGGCTCTTTCAGgtcagatgatttggct-ttccagttctgtg----gctcgcataacgctct--cttgtcttgcag------------------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208344497|gb|DC905058.1|DC905058
EST:     GCCCATACCTTGTTGTGGCCTCGTGTATCTGATTTGACTGGCTCTTTCAG                         GCTTTACAAAAAGAAAGTACTTGAGGAGGTCGTACAGACATGCGTGAGCAA
genomic: GCCCATACCTTGTTGTGGCCTCGTGTATCTGATTTGACTGGCTCTTTCAGgtaaaagatt ... cctttgacagGCTTTACAAAAAGAAAGTACTTGAGGAGGTCGTACAGACATGCGTGAGCAA