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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAATCAAATGTTGAACTTGGAATATATGGAACTGGTGCTCATTCTGATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctattttttaaccgtcaatattgttttgtatgtacgtataagttggctgcatctgtgttatcggtcctcaatggatgtacgtcatgacaatgtgtag...

Basic information

species Physcomitrella patens
transcript PP1S180_67V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S180_67V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv11s0016g03200.t01 (Vitis vinifera), 5'ss of exon 6
TGAGAAATCAAATGTTGAACTTGGAATATATGGAACTGGTGCTCATTCTGATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctattttttaaccgtcaatattgttttgtatgtacgtataagttggctgcatctgtgttatcggtcctcaatggatgtacgtcatgacaatgtgtag
| | |  ||  ||         |||||||||||| | ||||| |||||||| |||||||||||||| ||  | || || || || || |  || || || || | |  | |     |   | | | |||    | |   || || |    | ||    |  | | ||   | ||| ||      |||   || ||     
TCAAATCTCTGATCCCTTGAAGGGAATATATGGAGCAGGTGCACATTCTGACTATGGCCTGATTACCCTCTTGGCAACAGATGATGTCCTAGGACTTCAAgtacgaactct-----gcagaaaatttttaagctatgt-tacaattgtatttcac--ataattttggaagtgaattgaaacttttcaattcattgcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162254586|gb|FC429436.1|FC429436
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|208393130|gb|DC929625.1|DC929625
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAA-CTGCAGTACCCCAGGTT-GGGA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGA
EST: gi|208365735|gb|DC944163.1|DC944163
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|162220966|gb|FC396151.1|FC396151
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|67698972|gb|BJ959205.1|BJ959205
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|18340553|gb|BJ172581.1|BJ172581
EST:     ATTATGGCNTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTAGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|208364966|gb|DC947108.1|DC947108
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|162220965|gb|FC396150.1|FC396150
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|100417046|gb|BY993217.1|BY993217
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|37821493|gb|BJ579559.1|BJ579559
EST:     ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA
EST: gi|18340752|gb|BJ172783.1|BJ172783
EST:     ATTATGGCNTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAG                         ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTAGGGAGGATGTCCCACCA
genomic: ATTATGGCCTGATTACTCTTCTTGCTACGGACGACGTGCCTGGTCTCCAGgtcctatttt ... ctgttaacagATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCA