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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaatttgccttacttgatttattgtcattcatgatgatttatggataatcatatttttattcacaggcagatcttgtagatgatggtgggtcacgggca...

Basic information

species Physcomitrella patens
transcript PP1S17_368V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os10g34710.1 (Oryza sativa), 5'ss of exon 6
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaatttgccttacttgatttattgtcattcatgatgatttatggataatcatatttttattcacaggcagatcttgtagatgatggtgggtcacgggca
||| || |||||  ||||  | |||||||| ||||| || || ||  | || || ||||||||||| |||||| | ||||||||||| || ||||||||||||| |    |    ||  | ||||| ||  |  |  || || | | ||  | | ||| ||| | |  |   | |||||  | |  |             
AGGTGGGGGTGGCATAGAATATGAGATCCTACAAACCAACCCAATACTCGAGGCTTTTGGCAACGCAAAGACACTAAGAAATGACAACTCAAGTCGCTTTgtaagtaatttcttgtgggt-attgtaat--accacaatgta-gaacaa--agagtttgattgatatccttgttttgta--ttacag-------------

upper sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G113202_T01 (Zea mays), 5'ss of exon 6
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaatttgccttacttgatttattgtcattcatgatgatttatggataatcatatttttattcacaggcagatc-ttgtagatgatggtgggtcacgggca
||| ||  ||||  | ||  |||| || || || |||||||| ||  | || || |||||||| || ||||||||||||||||| || || ||||| ||||||| ||   ||| ||  | |  ||| ||    ||   | |       |  | |  |||      || | |||| || |  |  || |  |          
AGGTGGAAGTGGCATTGAATACGAAATTCTTCAGACAAATCCAATACTCGAGGCTTTTGGCAATGCAAAGACATTGAGAAATGATAACTCAAGTCGTTTTgtaagtt---ttatttattcttgtgtgat----gactgtgttcactatactacagctttgaatgaagaccgatccttattcacaattgcag----------

upper sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G139583_T02 (Zea mays), 5'ss of exon 6
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaatttgccttacttgatttattgtcatt-catgatgatttatggataatcat--atttttattcacaggcagatcttgtagatgatggtgggtcacgggca
||| ||  ||||  | ||  |||| || || || || ||||| ||  | || || |||||||| || ||||||||||||||||| || || ||||| ||||||| ||   ||  ||  | | |  ||| |  |  |    ||  | || |  ||  || ||||||| ||     |                            
AGGTGGAAGTGGCATTGAATACGAAATTCTTCAGACCAATCCAATACTCGAGGCTTTTGGCAATGCAAAGACATTGAGAAATGATAACTCAAGTCGTTTTgtaagttttatttattcgtgtgtgttcactatactacagctt-cgaatgaagatcaatctttattctcaattgcag---------------------------

upper sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 7
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaatttgccttacttgatttattg-tcattcatgatgat-ttatggataatcatatttttattcacaggcagatcttgtagatgatggtgggtcacgggca
 || ||  ||||  ||||| | |||||  |  | || ||||| ||  ||||||| |||||||| || || ||||||||||||||||| || ||||| |||||||  | ||| |||||   |  |  |  || |   ||   || | |  |||      |  |||| |   |      |       || || | | |   |  
CGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTgtaagattcctgacttgtgatgctaattctttaaattgccattcttgtgaattgctgctacattcccccactttcagtcacagaaatagttgat-atatgt-

upper sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA09G42180.1 (Glycine max), 5'ss of exon 5
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaatttgccttacttg--------attt-----attgtcattcatg---atgatttatggataatcatatttttattcacaggcagatcttgtagatgatggtgggtcacgggca
 || ||  ||||  ||||| | |||||  |  | || ||||| ||  ||||||| ||||| || || || ||||||||||||||||| || ||||| |||||||  | ||| || ||        |||      |||| ||||| ||   ||   |  |  ||   |  | ||| | ||||||  | || || || |||                 
TGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTgtaagattcctgacatgtgatgctaattctttaaattgccattcttgtgaattgctgctacattcccccactttcagtcacagaaatattttatatatgt----------------

upper sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaa--tttgccttact-tgatttattgtcattcatgatgat-ttatggataatcat----atttttattcacaggcagatcttgtagatgatggtgggtcacgggca-------
||||||  | ||| | ||  | ||||| ||  | || ||||| ||||| ||||||||||| || || || |||||||||||||| ||||| ||||| |||||||    | | | | | |||||| |    |||  | || || |||||   | || |    | |||||       | |  |||   | ||| || |  |  |     |       
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcaca-atgttgttttgatattaaaatatacag