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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag

Basic information

species Physcomitrella patens
transcript PP1S178_86V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 6
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag
| || || |   | || ||||| || || ||||||||||| |||||  | ||||| ||||||||||||||  |||||||||| || ||| |    |    | |  || |  ||| | ||       | | ||||      | |  | |  || |    |  | |  |  ||     |  || | | ||                                        
GCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATgtatgcttcgtttaaat--ccttacttttctcaagaaatatatatatcagcgcttctcctta-tcattactctcatatcctggataacactgcatctgtattt---------------------------------------

upper sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 3
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag
| ||||| || ||||||||||| |||||||||| |||||| ||||| ||||| ||  | ||||| |||||  | ||||| ||||| |||| |||   |    |  |  | |  | | |  || | |    || | || | |   |    || |     ||       ||| |  ||| |  ||  || | ||                                    
GAAGGGTCACGCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCATgtaactgccttc----tatcatttacctgcccctttct-tcacctaac-tactttgcaaaactcccaccttctgcaaacaattactagtttcttcttagttcactt------------------------------------

upper sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 3
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag
| ||||| || ||||||||||| |||||||||| |||||| ||||| ||||| ||  | ||||| |||||  | ||||| ||||| |||| |||   |    |  || | || | | |       || || | |  ||   | ||  ||  | |        ||||   ||          |    | | | | |                                 
GAAGGGTCACGCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAAgtaactgccttc----tatcctttatctgcac-----ctttcttcacctaaacacaggacaaataattcattaaaattttcaaatgaaacccccctaccctcaatcaac---------------------------------

upper sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 6
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaag-tgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttt--------------tttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag----------
|| | ||||||||||||||||| || ||||||| ||||||| |  |||| || ||  ||||||| |||||| ||||||| || || ||||| |    | |||         |||       ||   | || | |  || |  ||  |||       ||||  |   |                | || |   ||| | |  ||   |||  | | |||||| || |  ||    ||  |   |          
GTCGCGTGACACCTGAAAGTGTAATATACAGCTTTGGAACTCTATTACTTGACCTTCTGAGTGGAAAGCATATACCTCCAAGCCATgtaaggtttccaaatatccttttgaattggtaatatttcttagtgtctgttactggattctgactaggaagcattctccctgagcttgagagaagcatgttataacttaatatccttgaatagtat-agtattttgctaatccattaccttgtatggtgtattctag

upper sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag
| ||||| |  || || ||||| || ||||| |||||||| |||||| | || |||||||||||||||||| | ||||| ||||| |||  || ||   |     || |    |     |||   |||||   | |  | |   |     ||  |   | |  | |    |||  | |  |  ||||| ||||                                   
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgta--tgttgctttccatgccatatactt----gttagattgttctccatggtttgaaactc-tcagggatttttactctgcagtttaatgtgctagtttttcttta-----------------------------------

upper sequence: PP1S178_86V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 5
GTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCACgtaagtgctgacatagtgaccctgatttccgcagttgtgttgtttatcgtaatctatgatgaaccaatggcatgtttttttttatttttttttattttttttatttagcgttaatattttcctgaagcaagtgctcttgcag
| ||||| || |||||||||||||||||||||| ||| ||||| ||  | |||||| | ||||| |||||| | || || ||||| || |||      ||  |     ||||    | | || | |  ||  |    ||         ||  || || |  ||||| ||      | |        | || | | | |   |                          
GAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCATgtgagtca----attatacttgtgat----gaacttatatgcttagttaatatt--------acagatagcttcatttttgtttgacaatctggaaaccatgatcttgtggttgca--------------------------