1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGGAGATGTCCCGGTTGTAGCACCTGGCATGAAGCAGTTACTCTATGTGGAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagacctaatccccaagtaccattcaaggttacaattgtggcatttagtgagtttcatgttagtgccttcaaaaatcagagcaccatgtggaaac...
species | Physcomitrella patens |
transcript | PP1S173_83V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAG GCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTACEST: gi|67727274|gb|BJ977533.1|BJ977533
genomic: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagac ... ggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
EST: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAG GCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTACEST: gi|37824444|gb|BJ582510.1|BJ582510
genomic: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagac ... ggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
EST: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAG GCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
genomic: GAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagac ... ggatgtgcagGCAAGGGACGCTCGGGTGCATTGACATGTGTCGACTCTGTAGTGCACGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAGATGTCCCGGTTGTAGCACCTGGCATGAAGCAGTTACTCTATGTGGAGGTTCGCTTCTTGCTCGCCTCCCTCAGCAATGGAGCTTGTAGTGACAGgcaagtagacctaatccccaagtaccattcaaggttacaattgtggcatttagtgagtttcatgttagtgccttcaaaaatcagagcaccatgtggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatca