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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAAAGGCTTACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaacttttccacttccacgggaactaacaagtagtttctttcagactcgtgcatttactgcatttatgtacaagacattcctctgggtgcccttgtgtagtgggttgacattgaagccatttctgaatgtttgggagctgaattaaatgtgttggttcatacag

Basic information

species Physcomitrella patens
transcript PP1S168_70V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391163|gb|DC942075.1|DC942075
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|18360636|gb|BJ192699.1|BJ192699
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAG
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAG
EST: gi|100386703|gb|BY970244.1|BY970244
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGGATTAAGTACAACTGTGAAAACGGGAGGTC-AGCTTCTTGAAA
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGG-AGGTCCAGCTCCT-GAAA
EST: gi|162194861|gb|FC370525.1|FC370525
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|162223684|gb|FC399457.1|FC399457
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|100405914|gb|BY991447.1|BY991447
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|162162825|gb|FC338087.1|FC338087
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|18365419|gb|BJ197494.1|BJ197494
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|162181557|gb|FC358171.1|FC358171
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|18346813|gb|BJ178858.1|BJ178858
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAA
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAA
EST: gi|18366141|gb|BJ198219.1|BJ198219
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGTTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|18371368|gb|BJ202970.1|BJ202970
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGG
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGG
EST: gi|100368990|gb|BY984972.1|BY984972
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|162193559|gb|FC370462.1|FC370462
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|208384123|gb|DC911259.1|DC911259
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
EST: gi|162164264|gb|FC342079.1|FC342079
EST:     ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAG                         GATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC
genomic: ACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaac ... gttcatacagGATTTTGGAATTAAGTACAACTGTGAAAACGGAGGTCCAGCTCCTGAAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGAAAAGGCTTACGGGGCCTTCATTCTGACTGCCAGCCACAACCCTGGTGGTCCCGACGAGgtgatctaacttttccacttccacgggaactaacaagtagtttctttcagactcgtgcatttactgcatttatgtacaagacattcctctgggtgcccttgtgtagtgggttgacattgaagccatttctgaatgtttgggagctgaattaaatgtgttggttcatacag

- - - - - - - - - - - - - - - - - - - - - - -  TGGTGG