1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGAGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaatcccacgtttttgaaattccttgatatttaaacaaaaactgtcttggatttatgttgtattctttaaacggaccttgagctgtaacttacacgtgttgctgttgtctacag
species | Physcomitrella patens |
transcript | PP1S162_133V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAG ATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTGEST: gi|162152857|gb|FC328951.1|FC328951
genomic: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaat ... ttgtctacagATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTG
EST: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAG ATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTGEST: gi|162237673|gb|FC413288.1|FC413288
genomic: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaat ... ttgtctacagATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTG
EST: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAG ATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTGEST: gi|37846008|gb|BJ604016.1|BJ604016
genomic: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaat ... ttgtctacagATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTG
EST: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAG ATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTGEST: gi|162218006|gb|FC393690.1|FC393690
genomic: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaat ... ttgtctacagATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTG
EST: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAG ATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTG
genomic: AGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaat ... ttgtctacagATGAGTTCTGTTGATGCTGCAATTGATAAGAGGATTTTAGAAGGCAGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAGCGGAGATTGTCTTTGCAGAAGTACCAGGTTCATGACGAAACAATTCAGgtaagtgaatcccacgtttttgaaattccttgatatttaaacaaaaactgtcttggatttatgttgtattctttaaacggaccttgagctgtaacttacacgtgttgctgttgtctacag
- - - GGAGAT
- - - - - - - - - - - AGAAGT