Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacctgaatcattgcctcggatttgcgtgattatgttatttctacatgatgtaaaaggattgaaaaaaagctttggaacaatttcctgttactg...

Basic information

species Physcomitrella patens
transcript PP1S160_44V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100384912|gb|BY969647.1|BY969647
EST:     GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCCG                         GT-GAAATTCCTGGAGGAAAGAG-CAAANCCATCCNATTTTTGT-GATAA
genomic: GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCC-Ggtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAA-GAGGCAAA-CCATCC-ATTTTTGTTGATAA
EST: gi|67718754|gb|BJ969013.1|BJ969013
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAG
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAG
EST: gi|162258773|gb|FC434572.1|FC434572
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: gi|22132646|gb|BQ827270.1|BQ827270
EST:     CAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: CAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: gi|208389079|gb|DC937412.1|DC937412
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCA-GTGGGAGATTGTGCCG                         GTTGAA-TTCNTGGAGAAA-AG-CAAACCATCCATTT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTT
EST: gi|67727140|gb|BJ977399.1|BJ977399
EST:     GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGA
genomic: GGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGA-TTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGA
EST: gi|162177571|gb|FC352429.1|FC352429
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: gi|40781593|gb|AJ583523.1|AJ583523
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: gi|208362110|gb|DC943523.1|DC943523
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: gi|162166659|gb|FC343551.1|FC343551
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
EST: gi|19782978|gb|BQ039945.1|BQ039945
EST:     AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG                         GTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT
genomic: AGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacc ... atatttttagGTTGAAATTCCTGGAGGAAGAGGCAAACCATCCATTTTTGTTGATAAAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCGgtaagatacctgaatcattgcctcggatttgcgtgattatgttatttctacatgatgtaaaaggattgaaaaaaagctttggaacaatttcctgttactg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT